PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G05330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 188aa    MW: 20210.8 Da    PI: 10.1948
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G05330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.43.5e-3177132258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep+YVNa+Qy++Il+RRq+Rak+e+e+k  +k rkpylheSRh hAl+R+Rgs+GrF
  OPUNC08G05330.1  77 EPIYVNARQYHGILRRRQSRAKAESENKA-NKIRKPYLHESRHLHALKRARGSSGRF 132
                      8****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-3174135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.95975135IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-2677132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-2378100IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-23109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKPDGETQLR PTAAGHPDPG LGTSSTEYVA PAPVAYPYIG TNYGGIYGAY SGQPLVNAAL  60
MALPPHSVPL VTDAIVEPIY VNARQYHGIL RRRQSRAKAE SENKANKIRK PYLHESRHLH  120
ALKRARGSSG RFLNSKVVEG KQDTKSVDKK DGAVPSEEKK NNKLANSSIK LENASTITQP  180
GADASAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-1975136162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880270.0AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0599030.0AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence.
GenBankHQ7314790.0HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648196.11e-119PREDICTED: nuclear transcription factor Y subunit A-4 isoform X1
SwissprotQ84JP16e-36NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0E0LS571e-135A0A0E0LS57_ORYPU; Uncharacterized protein
STRINGLOC_Os08g09690.11e-119(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165581313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-37nuclear factor Y, subunit A7